Publications

International Citations

» Times cited: 376 (self-citations excluded)

» h-index: 7

International Patents

» LOFTMAN RC, MORGAN KE, MUMCUOGLU E, USTUNER KF, BANJANIN Z (05.19.2005), Transmit Based Axial Whitening, US Patent no: US2005107699

International Journal Papers

» Mumcuoğlu EU, Long FR, Castile RG, Gurcan MN, (2013), Image Analysis for Cystic Fibrosis: Computer-Assisted Airway Wall and Vessel Measurements from Low-Dose, Limited Scan Lung CT Images, Journal of Digital Imaging, 26(1): 82-96.

» EH Kale, EU Mumcuoglu, S Hamcan, (2012), Automatic segmentation of human facial tissue by MRI–CT fusion: A feasibility study, Computer Methods and Programs in Biomedicine, 108(3): 1106-20.

» EU Mumcuoglu, R. Hassanpour, SF Tasel, G. Perkins, ME Martone, MN Gurcan, (2012), Computerized detection and segmentation of mitochondria on electron microscope images, Journal of Microscopy, Volume: 246, Page: 248–265.

» EU Mumcuoglu, FM Bozkurt, M Aslan, E Sener, O Ugur, (2011), Computerized scar detection on renal cortical scintigraphy images. Nuclear Medicine Communications, 32:1070–1078.

» Konukseven EI, Onder ME, Mumcuoglu E, Kisnisci RS. (2010), Development of a Visio-Haptic Integrated Dental Training Simulation System, Journal of Dental Education, 74 (8): 880-891. (Times Cited: 1)

» Oğul, H., Mumcuoğlu EÜ (2007) A discriminative method for remote homology detection based on n-peptide compositions with reduced amino acid alphabets, BioSystems, January, 87 (1), pp.75-81. (Times Cited: 10)

» H.Ogul, E.Mumcuoglu, (2007), Subcellular Localization Prediction with New Protein Encoding Schemes, IEEE-ACM Transactions on Computational Biology and Bioinformatics, 4 (2): 227 – 232. (Times Cited: 6

» Mumcuoğlu EÜ, Nar F, Yardımcı Y, Koçak U, Ergün EL, Volkan Salancı B, Uğur O, Erbaş B (2006) Simultaneous Surface Registration of Ictal, Interictal SPECT and MR Images for Epilepsy Studies, Nuclear Medicine Communications, Jan;27(1):45-55. (Times Cited: 4)

» H.Ogul, E.Mumcuoglu, (2006), SVM-based Detection of Distant Protein Structural Relationships Using Pairwise Probabilistic Suffix Trees, Computational Biology and Chemistry, 30 (4): 292-299. (Times Cited: 5)

» Celasun B, Mumcuoglu EÜ, Kalkan H (2005), A Simulation Study on the Sampling of Sentinel Lymph Nodes, Analytical and Quantitative Cytology and Histology, vol. 27, no. 4, pg. 187-194. (Times Cited: 3)

» Singh M., Mumcuoglu EÜ (1998) Design of a CZT Based BreastSPECT System, IEEE Transactions on Nuclear Science, vol. 45., no. 3, pg. 1158-1165. (Times Cited: 22)

» Chan M.T., Leahy R.M., Mumcuoglu EÜ, Cherry S.R, Czernin J., Chatziioannou A. (1997) Comparing Lesion Detection Performance for PET Image Reconstruction Algorithms: A Case Study, IEEE Transactions on Nuclear Science, vol. 44, no. 4, pg. 1558-1563. (Times Cited: 15)

» Mumcuoglu EÜ, Leahy R., Cherry S.R. (1996) Bayesian Reconstruction of PET Images: Methodology and Performance Analysis, Physics in Medicine and Biology, vol. 41., pg. 1777-1807. (Times Cited: 99)

» Cherry S.R., Shao Y., Siegel S., Silverman R.W., Mumcuoglu E., Meadors K., Phelps K. (1996) Optical Fiber Readout of Scintillators Arrays using a Multi-Channel PMT: A High Resolution PET Detector for Animal Imaging, IEEE Transactions on Nuclear Science, vol. 43, no. 3, pg. 1932-1937. (Times Cited: 60)

» Mumcuoglu EÜ, Leahy R., Cherry S.R., Zhou Z.Y. (1994) Fast Gradient-Based Methods for Bayesian Reconstruction of Transmission and Emission PET Images, IEEE Transactions on Medical Imaging, vol. 13, no.4, pg. 687-701. (Times Cited: 139)

International Conference Presentations

» Mumcuoglu EU, Prescott J, Baker BN, Clifford B, Long F, Castile R, Gurcan MN., Image analysis for cystic fibrosis: Automatic lung airway wall and vessel measurement on CT images, Conf Proc IEEE Eng Med Biol Soc.,1:3545-8, 2009.

» E. Mumcuoğlu, F. Nar, Ö. Uğur, MF. Bozkurt, M. Aslan, Image-based retrieval system and computer-aided diagnosis system for renal cortical scintigraphy images, Medical Imaging 2008: Computer-Aided Diagnosis, Maryellen L. Giger; Nico Karssemeijer, Editors, 69153J, Proceedings Vol. 6915, SPIE 2008.

» Ogul, H; Mumcuoglu, EU, Protein solvent accessibility prediction using support vector machines and sequence conservations, Artificial Intelligence and Neural Networks, Published in Lecture Notes in Artificial Intelligence, Volume: 3949 Pages: 141-148, 2006

» V. Kılıç, U. Koçak, İ. Konukseven, E. Mumcuoğlu, GPU Supported Haptic Device Integrated Dental Simulation Environment, Proceedings of Eurohaptics’2006, Paris, France, pp. 135-140.

» F. Nar, E. Mumcuoglu, Y. Yardimci, U. Kocak, Simultaneous Registration of Ictal SPECT, Interictal SPECT and MR Images for Epilepsy Studies: Method and Simulations, Proceedings of the IASTED International Conference on Biomedical Engineering, pp. 11-16, Feb. 16-18 2005, Innsbruck, Austria, ACTA Press, Editors: K.-P. Adlassnig, M. Bracale.

» E. Mumcuoglu, F. Nar, Y. Yardimci, U. Kocak, E.L. Ergün, B. Volkan, Ö. Uğur, B. Erbaş, Simultaneous Triple-Registration of Ictal SPECT, Interictal SPECT and MR Images for Epilepsy Studies: Method and Validation, Proceedings of the International Europian Signal Processing Conference (Eusipco), Antalya - Turkey, September 2005, ISBN: 975-00188-0-X, pp. 100-103.

» H Oğul, EÜ Mumcuoğlu, Prediction of Protein Subcellular Localization Using Support Vector Machines and Probabilistic Suffix Trees, Proceedings of International Symposium on Health Informatics and Bioinformatics, Antalya - Turkey Nov. 2005, ISBN 429-239-6, pp. 56-62.

» K Kuru, B Celesun, E Mumcuoğlu, The Use of Lab Color Model for Sharpening and Optimization of Digital Images of Hematoxylin & Eosin Stained Microscopical Materials, Proceedings of International Symposium on Health Informatics and Bioinformatics, Antalya - Turkey Nov. 2005, ISBN 429-239-6, pp. 210-218.

» Ogul, H; Mumcuoglu, UE, Discriminative remote homology detection using maximal unique sequence matches, Advances in Intelligent Data Analysis, Published in Lecture Notes in Computer Science, A.F. Famili et al. (Eds.):, 3646, pp. 283 – 292, Springer-Verlag, 2005

» E. Ergut, Y. Yardimci, E. Mumcuoglu, O. Konu (2003), Analysis of Microarray Images Using FCM and K-means clustering algorithms, Proceedings of the International conference of Signal Processing, vol:1, no:2, page 8, September 24-26, Turkey

» B. Gulden, E. Mumcuoglu, N. Baykal (2003), A GIS System For Ambulatory Transport, BIOMED 2003, 10th Biomedical Science and Technology Symposium, P83, Turkey (also in the Proceedings of the Second IASTED International Conference on Biomedical Engineering Pages: 431-435)

» Singh M, Mumcuoglu E (1997), Design of a CZT Based BreastSPECT System, IEEE Nuclear Science Symposium - Conference Record, Vols 1 & 2 Pages: 1150-1154 Published: 1998

» Leahy, RM; Chan, MT; Cherry, SR; Mumcuoglu EU; et al. Comparison of lesion detection performance for PET image reconstruction using channelized hotelling observers, Society of Nuclear Medicine Meeting, Journal of Nuclear Medicine Volume: 38 Issue: 5 Pages: 286-286, 1997 (Times Cited: 1)

» Mumcuoglu EU., et.al. (1996) Bayesian Image Reconstruction for Cardiac PET, The Society of Nuclear Medicine Meeting, Denver, Colorado, Journal of Nuclear Medicine Volume: 37 Issue: 5 Pages: 510-510 Published: MAY 1996
Mumcuoglu EU, Leahy R. et.al. (1996), Accurate Geometric and Physical Response Modeling for Statistical Image Reconstruction in High Resolution PET, IEEE Nuclear Science Symposium, Vols 1-3 Pages: 1569-1573 Published: 1997, Anaheim, CA

» Chan MT, Leahy R, Mumcuoglu EU, et.al. (1996), Comparing Lesion Detection Performance for PET Image Reconstruction Algorithms: a Case Study, IEEE Nuclear Science Symposium - Conference Record, Vols 1-3 Pages: 1552-1556 Published: 1997, Anaheim, CA

» Cherry S.R., Shao Y., Siegel S., Silverman R.W., Meadows K., Mumcuoglu E.U et.al. (1996) Micropet: A Dedicated PET Scanner for Small Animal Imaging, IEEE Nuclear Science Symposium - Conference Record, Vols 1-3 Pages: 1120-1124 Published: 1997, Anaheim, CA

» Cherry, SR; Shao, YP; Siegel, S; et al. Fiber readout of scintillator arrays using a multi-channel PMT: A high resolution PET detector for animal imaging, IEEE Nuclear Science Symposium and Medical Imaging Conference Record, Vols 1-3 Pages: 1766-1770 Published: 1996

» Cherry, SR; Shao, Y; Silverman, RW; et al. Micropet: A dedicated PET scanner for small animal imaging. The Society of Nuclear Medicine Meeting, Journal of Nuclear Medicine Volume: 37 Issue: 5 Pages: 334-334 Published: MAY 1996 (Times Cited: 3)

» Mumcuoglu E.U., Leahy R., et.al. (1995) A Phantom Study of the Quantitative Behavior of Bayesian PET Reconstruction Methods, IEEE Nuclear Science Symposium and Medical Imaging Conference Record, Vols 1-3 Pages: 1703-1707 Published: 1996, San Francisco, CA

» Zhou Z., Leahy R., Mumcuoglu E.U. (1995) Simultaneous Hyperparameter Estimation and Bayesian Image Reconstruction for PET, Nuclear Science Symposium & Medical Imaging Conference - 1994 IEEE Conference Record, Vols 1-4 Pages: 1604-1608 Published: 1994, San Francisco, CA

» Zhou Z., Leahy R., Mumcuoglu E.U. (1995), Maximum Likelihood Hyperparameter Estimation for Gibbs Priors from Incomplete Data with Applications to Positron Emission Tomography, Information Processing in Medical Imaging Conference, Volume: 3 Pages: 39-51

» Mumcuoglu E.U., Leahy R., et.al. (1994) Bayesian Reconstruction for Attenuation Corrected Whole-Body PET Using Very Low Count Data, The Society of Nuclear Medicine Meeting, Orlando, Florida, Journal of Nuclear Medicine Volume: 35 Issue: 5 Pages: P34-P34 Published: MAY 1994

» Zhou Z., Leahy R., Mumcuoglu E.U. (1994), On the Effects of Hyper-Parameter Estimation on ROI Bias and Variance in Bayesian PET, The Society of Nuclear Medicine Meeting, Orlando, Florida, Journal of Nuclear Medicine Volume: 35 Issue: 5 Pages: P72-P72 Published: MAY 1994

» Mumcuoglu E.U., Leahy R., et.al. (1994) A Gradient Projection Conjugate Gradient Algorithm in Bayesian PET Reconstruction, Nuclear Science Symposium & Medical Imaging Conference - 1994 IEEE Conference Record, Vols 1-4 Pages: 1212-1216 Published: 1994, Norfolk, Virginia

» Mumcuoglu E.U., Leahy R., et.al. (1993) Fast Bayesian Techniques for Attenuation Corrected Whole-Body PET, Nuclear Science Symposium & Medical Imaging Conference, Vols 1-3 Pages: 1902-1906 Published: 1993, San Francisco, CA

» Zhou Z., Leahy R., Mumcuoglu E.U. (1993), A Comparative Study of the Effects of Using Anatomical Priors in PET Reconstruction, Nuclear Science Symposium & Medical Imaging Conference, Vols 1-3 Pages: 1749-1753 Published: 1993, San Francisco, CA

» Mumcuoglu E.U., Leahy R., et.al. (1992) A Statistical Approach to Transmission Image Reconstruction from Ring Source Calibration Measurements in PET, Conference Record of the 1992 IEEE Nuclear Science Symposium and Medical Imaging Conference, Vols 1 and 2 Pages: 910-912 Published: 1992, Orlando, Florida (Times Cited: 2)

» Mumcuoglu E.U., Sezer M.E., (1990) On Ripple-Free Deadbeat Control Problem, Paper presented at the IEEE Bilkent International Conference on New Trends in Communication, Control and Signal Processing, Ankara, Turkey

National Conference Presentations

» P. YILDIRIM, UE. MUMCUOĞLU, MR. TOLUN, MN. ÖZMEN, M. ULUDAĞ, Klinik Veritabanlarında Etkin Veri Madenciliği Amacıyla Çoklu-ilişkisel Veri Madenciliği Yaklaşımı, 5. Ulusal Tıp Bilişimi Kongresi/Medical Informatics 2008 Turkey

» E. Şener, E. Mumcuoğlu, E. Kale, V Akgün, BT ve MR Görüntülerini 3 Boyutta Çakıştırarak ve Birlikte Kullanarak, Otomatik ve Yarı-Otomatik Bölütleme Yöntemleri Geliştirilmesi ve Bu Yöntemlerin Kafa Modeli Oluşturma ve Yüz Mimik Kaslarının Bölütlenmesine Uygulanması, 5. Ulusal Tıp Bilişimi Kongresi/Medical Informatics 2008 Turkey

» F. NAR, E. Mumcuoğlu, U. Koçak, Ö. Uğur, F. Bozkurt, M. Aslan, K. Güneştepe, M. Cerrahoğlu, Sintigrafik Böbrek Görüntüleri için İçerik Tabanlı Arama Sistemi, IEEE 14th Signal Processing and Communications Applications, 17-19 April 2006, pg. 1-4, Antalya.

» K. KURU, H. GÜL, G. GÜRSEL, K. ARDA, E. MUMCUOĞLU, N. BAYKAL, Sağlık Hizmetlerinde Kaynakların Doğru Kullanımında Bilgisayar Benzetim Yönteminin Kullanılması: Bir Poliklinik Çalışması, 2. Ulusal Tıp Bilişimi Kongresi/Medical Informatics 2005 Turkey Bildiriler/Proceedings, pp. 14-20 (Editör: K. Hakan Gülkesen)

» B. Volkan, E.L. Ergün, F. Nar, E. Mumcuoğlu, Y. Yardımcı, A. Cila, S. Saygı, Ö. Uğur, B. Erbaş (2004), Geliştirdiğimiz Yazılım ile Epilpsi odağı oluşturulmuş beyin fantomu kullanılarak Siscom algoritmasının uygulanması: Analyze 5.0 ile sonuçlarının kıyaslanması, (6th International Congress of Nuclear Oncology and 17th National Congress of Turkish Nuclear Medicine), Turkish Journal of Nuclear Medicine, Vol.13, No.1, Page:10.

» H. Oğul, Ü.E. Mumcuoğlu, Protein Ailelerinde En Büyük Ortak İkincil Yapı Eşleşmelerinin Bulunması, Biyomedikal Müh. Toplantısı (BIYOMUT), sayfa 107-113, Mayıs 2004, İstanbul.

» F. Nar, C. Gencel, B. Volkan, E. Mumcuoglu, Y. Yardimci, A. Erol, O. Ugur, B. Er (2003), 3-boyutlu ve Moduler Tibbi Imge Analizi Yazilimi, Sinyal Isleme ve Iletisim Uygulamalari Kurultayi, Koc University, Pages:753-756, Turkey