2015

Cakir, M.P., Acarturk, C., Alasehir, O. & Akbulut, U. (2015). A Comparative Analysis Of Global And National University Ranking Systems. Scientometrics, doi10.1007/s11192-015-1586-6

Kaygusuz, Y. & Çakır, M.P. (2015). A Dynamic Field Theory Based Pilot Model To Control Aircraft Pitch Attitudes. Paper presented at the 4th EuroAsianPacific Joint Conference on Cognitive Science, Torino, Italy.

Çakir, M. P., Çakar, T. & Girişken, Y. (2015). Neural Correlates of Purchasing Behavior in the Prefrontal Cortex: An Optical Brain Imaging Study. Paper presented at CogSci 2015 Annual Meeting of the Cognitive Science Society, Pasadena, CA, USA.

Çakir, N., Çakir, M.P., & Lee, F. (2015). Using Optical Brain Imaging to Investigate Functional Changes During Game-Based Learning. Paper presented at EARLI 2015 Conference, Lymassol, Cyprus.

Çakir, M.P. & Stahl, G. (2015). Dragging as a Referential Resource for Mathematical Meaning Making in a Collaborative Dynamic-Geometry Environment. Proceedings of the International Conference on Computer-Supported Collaborative Learning (CSCL 2015), Gothenburg, Sweden. International Society of the Learning Sciences.

Adanır Afacan, G. & Çakir, M.P.(2015). Tools for Tracing the Development of Concepts through Discussions Mediated by a CSCL Environment: A Case Study. Proceedings of the International Conference on Computer-Supported Collaborative Learning (CSCL 2015), Gothenburg, Sweden. International Society of the Learning Sciences.

Çakır, M.P. (2015). Uçucuda Davranışsal, Sistemik, Fizyolojik ve Nörofizyolojik İzleme-Değerlendirme Yöntemleri. 2. Ulusal Havacılık Tıbbı Kongresi, İstanbul, s.95.

Çakır, M.P. (2015). Simülatör Eğitimi Sırasında Bilişsel İş Yükü Takibine Yönelik Örnek Durum Çalışmaları. 2. Ulusal Havacılık Tıbbı Kongresi, İstanbul, s.113.


2014

Alasehir, O., Cakir, M.P., Acarturk, C., Baykal, N. & Akbulut, U. (2014). URAP-TR: A National Ranking for Turkish Universities based on Academic Performance. Scientometrics, 101(1), 159-178.

Coskunçay, D. F., & Çakir, M. P. (2014). Examination of Computer Supported Collaborative Business Process Modeling with Activity Theory. In Proceedings of the XV International Conference on Human Computer Interaction (Interacción '14). ACM, New York, NY, USA, , Article 15 , pp. 1-8. doi=10.1145/2662253.2662268

Cakir, M.P., & Uzunosmanoglu, S.D. (2014). Gaze Coordination during Collaborative Problem Solving in GeoGebra. Paper presented at the Fifth North American GeoGebra Conference (GeoGebra-NA2014), Toronto, Canada.

Cakir, M.P., & Uzunosmanoglu, S.D. (2014). An Interactional Analysis of Gaze Coordination During Online Collaborative Problem Solving Activities. In J.L. Polman, E.A. Kyza, K. O’Neil et al. (Eds) Learning and Becoming in Practice: Proceedings of the 11th International Conference of the Learning Sciences (ICLS 2014), 1112-1116, International Society of the Learning Sciences: Boulder, CO.

Uzunosmanoglu, S.D., & Cakir, M.P. (2014). Examining an Online Collaboration Learning Environment with the Dual Eye-Tracking Paradigm: The Case of Virtual Math Teams. In P. Zaphiris, A. Ioannou (Eds). Learning and Collaboration Technologies. Designing and Developing Novel Learning Experiences
Vol. 8523, pp. 462-472, Springer Lecture Notes in Computer Science.

Girişken, Y., Cakir, M. P., Çakar, T. (2014). Monitoring neural correlates of purchasing behavior: An optical brain imaging study. In Proceedings of Global Marketing Conference (GMC 2014), Singapore.


2013

Duru, H. A., Cakir, M. P., & İşler, V. (2013). How Does Software Visualization Contribute to Software Comprehension? A Grounded Theory Approach. International Journal of Human-Computer Interaction, 29(11), 743-763.

Cakir, M. P. & Stahl, G. (2013). The Integration of Math Discourse, Graphical Reasoning and Symbolic Expression by a Virtual Math Team. In D. Martinovic, V. Freiman & Z. Karadag (Eds.), Visual Mathematics and Cyberlearning, 49-96. Springer: New York, NY.

Cakir, M. (2013). Towards Group Cognitive Analysis of Collaborative Learning with Eye-Tracking and Brain Imaging Technologies. Proceedings of the International Conference on Computer-Supported Collaborative Learning (CSCL 2013), Wisconsin, Madison. International Society of the Learning Sciences. Vol 2., pp. 227-228.

Cakir, M. P., & Acartürk, C. (2013). Micro-analysis of referring expressions in a dual eye tracking paradigm: Two case studies on voice and chat mediated interaction. In Proceedings of PRE-CogSci 2013 Workshop — Production of Referring Expressions: Bridging the gap between cognitive and computational approaches to reference

Özcan, O., Cakir,M. & Say, B. (2013). Exploring the Effects of Working Memory Capacity, Attention, and Expertise on Situation Awareness in a Flight Simulation Environment. In Proceedings of 17th International Symposium on Aviation Pscyhology (ISAP 2013), pp. 98-103. Curran Associates: Red Hook, NY.



2012

Cakir, M. (2012). A Group Cognitive Perspective on the Multimodal Analysis of Learning. In Proceedings - 3rd International Conference on Emerging Intelligent Data and Web Technologies, EIDWT 2012, Bucharest, Romania, pp. 205-210.

Cakir, M. P., Senyigit, A. M., Akay, D. M., Ayaz, H., Isler, V. (2012). Evaluation of UAS Camera Operator Interfaces in a Simulated Task Environment: An Optical Brain Imaging Approach. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 7366 LNAI , pp. 62-71.

Acartürk, C., & Çakır M. P. (2012). Towards building a corpus of Turkish referring expressions. In S. Demir, I. D. El-Kahlout & M. U. Dogan (Eds.), Proceedings of the Workshop on Language Resources and Technologies for Turkic Languages. LREC 2012 Language and Resources Evaluation Conference. pp 1-15.

Ayaz, H., Shewokis, P. A., Izzetoǧlu, M., Çakir, M. P., & Onaral, B. (2012). Tangram solved? Prefrontal cortex activation analysis during geometric problem solving, In Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS, pp. 4724-4727.

Ayaz, H., Cakir, M.P., Izzetoglu, K., Curtin, A., Shewokis, P.A., Bunce, S. C., Onaral, B. (2012). Monitoring Expertise Development during Simulated UAV Piloting Tasks using Optical Brain Imaging. Paper presented at the IEEE Aerospace Conference, March 3-10, 2012, BigSky, MN, USA.

Ayaz, H., İzzetoğlu, K., Çakır, M. P., Curtin, A., Harrison, J., İzzetoğlu, M., Shewokis, P. A., Onaral, B. (2012). İnsansız Hava Araçları Koordinasyonunda Beyin İşlevlerinin İzlenmesi. 20. IEEE Sinyal İşleme ve İletişim Uygulamaları Kurultayı’nda sunulan bildiri. Fethiye, Muğla.


2011

Cakir, M. P., Ayaz, H., Izzetoglu, M., Shewokis, P. A., Izzetoglu, K. & Onaral, B. (2011). Bridging Brain and Educational Sciences: An Optical Brain Imaging Study of Visuospatial Reasoning. Paper presented at the International Conference on Education and Educational Psychology (ICEEPSY 2011), Istanbul, Turkey. Procedia - Social and Behavioral Sciences, 29(2011), 300-309. doi: 10.1016/ j.sbspro.2011.11.243

Stahl, G., Zhou, N. Cakir, M. P., & Sarmiento-Klapper, J. (2011). Seeing what we mean: Co-experiencing a shared virtual world. In H. Spada, G. Stahl, N. Miyake & N. Law (Eds). Proceedings of the International Conference on Computer-Supported Collaborative Learning (CSCL 2011), Hong Kong, China. International Society of the Learning Sciences. Vol 1., pp. 534-541

Gokcay, D., Cakir, M. P., Gozenman, F., Arslan, B., Ciftcioglu, M., Taskin, K., Ayaz, H. (2011). Changing pattern search component during probability learning: a study using fNIR neuroimaging. Paper presented at the 17th Annual Meeting of the Organization for Human Brain Mapping (HBM 2011), Quebec City, Canada

Alacam O. and Cakir, M. P. (2011). An investigation of the effect of event, task and visualization structures on graph comprehension using fNIR and eye tracking methodology. Front. Hum. Neurosci. Conference Abstract: XI International Conference on Cognitive Neuroscience (ICON XI). doi: 10.3389/conf.fnhum.2011.207.00481


2010

Stahl, G., Cakir, M. P., Weimar, S., Weusijana, B. K., & Ou, J. X. (2010). Enhancing mathematical communication for virtual math teams. Acta Didactica Napocensia, 3(2), 101-114.

Cakir, M. P., Menda, J., Ayaz, H., Izzetoglu, K., Onaral, B. (2010). Assessment of Expertise Development and Cognitive Workload of UAV Operators in a Simulated Environment: A Functional Brain Imaging Approach. Paper presented at the International Unmanned Vehicles Workshop (UVW2010) Istanbul, Turkey.

Cakir, M. P., Zemel, A., & Stahl, G. (2010). Interactional Achievement of Shared Mathematical Understanding in Virtual Math Teams. Gomez, K., Lyons, L., & Radinsky, J. (Eds.) Learning in the Disciplines: Proceedings of the 9th International Conference of the Learning Sciences (ICLS 2010) - Volume 1, Full Papers. International Society of the Learning Sciences: Chicago IL. pp. 325-332

Cakir, M. P., Ayaz, H., Menda, J., Izzetoglu, K., Onaral, B. (2010). Connecting Brain and Learning Sciences: An Optical Brain Imaging Approach to Monitoring Development of Expertise in UAV Piloting. Gomez, K., Lyons, L., & Radinsky, J. (Eds.) Learning in the Disciplines: Proceedings of the 9th International Conference of the Learning Sciences (ICLS 2010)- Volume 2, Short Papers, Symposia, and Selected Abstracts. International Society of the Learning Sciences: Chicago IL. pp. 462-463

Stahl, G., Ou, J. X., Cakir, M. P., Weimar, S., & Goggins, S. (2010). Multi-user support for virtual geogebra teams. Paper presented at the GeoGebra North America Meeting. Ithaca, NY.


2009

Cakir, M. P., Zemel, A., & Stahl, G. (2009). The joint organization of interaction within a multimodal CSCL medium. International Journal of Computer-Supported Collaborative Learning, 4(2), 155-190.

Cakir, M. P. (2009). The joint organization of visual, narrative, symbolic interactions. In G. Stahl (Ed.), Studying Virtual Math Teams, 99-140. Springer: New York, NY.

Cakir, M. P., Xhafa, F., & Zhou, N. (2009). Thread-based analysis of patterns in VMT. In G. Stahl (Ed.), Studying Virtual Math Teams, 359-372. Springer: New York, NY.

Zemel, A. &Cakir, M. P. (2009). Reading’s work in VMT. In G. Stahl (Ed.), Studying Virtual Math Teams, 261-278. Springer: New York, NY.

Zemel, A., Xhafa, F., & Cakir, M. P. (2009). Combining coding and conversation analysis of VMT chats. In G. Stahl (Ed.), Studying Virtual Math Teams, 421-450. Springer: New York, NY.

Cakir, M. P., Zemel, A., & Stahl, G. (2009). Interaction analysis of dual-interaction CSCL environments. Paper presented at the international conference on Computer-Supported Collaborative Learning (CSCL 2009), Rhodes, Greece.

Zemel, A., Cakir, M. P., & Stahl, G. (2009). Understanding and analyzing chat in CSCL as reading’s work. Paper presented at the international conference on Computer-Supported Collaborative Learning (CSCL 2009), Rhodes, Greece.

Zemel, A., Cakir, M. P., Zhou, N., & Stahl, G. (2009). Learning as a practical achievement: An interactional perspective. Paper presented at the international conference on Computer-Supported Collaborative Learning (CSCL 2009), Rhodes, Greece.


2008

Cakir, M. P.& Stahl, G. (2008). Collaborative Information Behavior of Virtual Math Teams in a Multimodal Online Environment. Paper presented at the HCI Symposium at ASIST Annual Meeting, Columbus, OH.

Cakir, M. P.& Zemel, A. (2008). Extending an Explanation: Achievement of Locally Adequate Symmetry of Situated Expertise. Paper presented at the 94th Annual Convention of National Communication Association (NCA), San Diego, CA.

Stahl, G. & Cakir, M. P. (2008). Integrating synchronous and asynchronous support for group cognition in online collaborative learning. In Proceedings of the 8th International Conference for the Learning Sciences (Vol 2), pp 351 - 358.

Zemel, A. &Cakir, M. P. (2008). Cognitive States, Assessment and Learning: An Interactional Perspective. Paper presented at the 94th Annual Convention of National Communication Association (NCA), San Diego, CA.



2007

Cakir, M. P., Zemel, A., & Stahl, G. (2007). The organization of collaborative math problem solving activities across dual interaction spaces. Paper presented at the international conference on Computer-Supported Collaborative Learning (CSCL 2007), New Brunswick, NJ.

Zemel, A., &Cakir, M. P. (2007). Reading's Work: The Mechanisms of Online Chat as Social Interaction. Paper presented at the 93rd Convention of National Communication Association (NCA), Chicago, IL.

Zemel, A., Shumar, W., Cakir, M. P. (2007). The disembodied act: Copresence and indexical symmetry in computer- mediated communication. Paper presented at the International Conference on Computer-Supported Collaborative Learning (CSCL 2007), New Brunswick, NJ.



2006

Stahl, G., Zemel, A., Sarmiento, J., Cakir, M. P., Weimar, S., Wessner, M., & Muhlpfordt, M. (2006). Shared Referencing ofMathematical Objects in Online Chat. In Barab, S. A., Hay, K. E., and Hickey,D. T. (Eds) Proceedings of ICLS2006, the 7th International Conference of the Learning Sciences. Lawrence Erlbaum Associates, Bloomington, IN. pp 716-722.


2005

Cakir, M. P., Xhafa, F., Zhou, N., & Stahl, G. (2005). Thread-based analysis of patterns of collaborative interaction in chat. In Looi, C-K., McCalla, G., Bredeweg, B., and Breuker, J. (Eds) Artificial Intelligence in Education, Supporting Learning through Intelligent and Socially Informed Technology. IOS Press, Amsterdam, NL. pp 120-127.

Zemel, A., Xhafa, F., & Cakir, M. P. (2005). What's in the mix? Combining coding and conversation analysis to investigate chat-based problem-solving. Paper presented at the 11th Biennial Conference of the European Association for Research on Learning and Instruction (EARLI 2005), Nicosia, Cyprus.

Ives, Z., Khandelwal, N., Kapur, A., Cakir, M. P. (2005). Orchestra: Rapid, Collaborative Sharing of Dynamic Data. Conference on Innovative Database Systems Research (CIDR 2005), Asilomar, CA.




Theses Supervised or Co-supervised


Yağmur, S. Usability Evaluation of Dynamic Geometry Software Through Eye Trackıng and Communication Breakdown Analysis. 2014.

Aşçı, O. The Role of Prefrontal Cortex in Purchasing Decisions: An Optical Brain Imaging Study. 2014.

Koçak, M. Bibliometric Analysis of Clinical Medicine Publications in Turkey. 2014.

Koçak, E.B. Physiological, Psychological and Attention Related Performance Problems of Shift Work System in Aselsan. 2014.

Duru, H. A. Yazılım Anlamada Görselleştirme Tekniklerinin Değerlendirilmesinde Yeni Bir Yaklaşım. 2013.

Türkmen, G. Neural and Ocular Correlates of Visuospatial Problem Solving Processes. 2013.

Özdemir, D. A Case Study of Problem Solving in Eye-Tracking. 2013.

Uzunosmanoğlu, S.D. Examining Computer-Supported Collaborative Problem Solving Processes Using the Dual-Eye Tracking Paradigm. 2013.

Polat, A. G. Modeling Neurons that can Self-organize into Building Blocks and Hierarchies: An Exploration Based on Visual Systems. 2012.

Öz, S. The Usability Testing of Family Medicine Information System Used in Turkey. 2012.

Özcan, O. O. Exploring the Effects of Expertise and Working Memory Capacity on Situation Awareness in Flight Simulator Game Environments. 2012.

Gözenman, F. Interaction of Probability Learning and Working Memory. 2012.